MRIQC: individual T1w report

Summary

  • BIDS filename: sub-001_T1w.
  • Date and time: 2020-12-29, 18:02.
  • MRIQC version: 0+untagged.2630.gf70c410.dirty.
  • Workflow details:
    • Detected hat mask was too small
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise
Approximate spatial normalization
Brain mask
Brain tissue segmentation
Artifacts in background
Head outline
"Hat" mask
Distribution of the noise in the background

Other

cjv0.4374389643246282
cnr3.1123339926064886
efc0.874621859799739
fber193.09597778320312
fwhmavg4.175593333333333
fwhmx4.25266
fwhmy4.39958
fwhmz3.87454
icvscsf0.18385450579122958
icvsgm0.4596769439761491
icvswm0.3564685502326213
inumed0.41166043281555176
inurange0.043761223554611206
qi10.0
qi20.0025337784299126753
rpvecsf64.99634311740498
rpvegm26.89854920219858
rpvewm36.37590012310307
sizex256
sizey256
sizez256
snrcsf2.141092691893538
snrgm13.308224540952484
snrtotal9.069411863913729
snrwm11.758918358895166
snrdcsf10.132589550649845
snrdgm26.80948739235251
snrdtotal25.433925391898544
snrdwm39.35969923269327
spacingx0.5
spacingy0.5
spacingz0.5
summarybgk14.669868268042556
summarybgmad16.647365619363526
summarybgmean42.35658645629883
summarybgmedian38.494964599609375
summarybgn25464.0
summarybgp0514.816553449630737
summarybgp9577.26477165222164
summarybgstdv25.39228057861328
summarycsfk-0.5873489965284553
summarycsfmad128.04198516981197
summarycsfmean273.08642578125
summarycsfmedian257.4745178222656
summarycsfn8621.0
summarycsfp0595.67726135253906
summarycsfp95482.2465515136719
summarycsfstdv120.24681854248047
summarygmk0.2876993242757435
summarygmmad50.37318399454586
summarygmmean680.4934692382812
summarygmmedian681.243408203125
summarygmn19301.0
summarygmp05596.062255859375
summarygmp95762.6469116210938
summarygmstdv51.18832778930664
summarywmk-0.13351647725559124
summarywmmad89.12942310352693
summarywmmean1004.1707153320312
summarywmmedian1000.1510009765625
summarywmn86284.0
summarywmp05874.9811065673828
summarywmp951151.6460388183593
summarywmstdv85.05418395996094
tpmoverlapcsf0.23830457031726837
tpmoverlapgm0.48738744854927063
tpmoverlapwm0.5025704503059387
wm2max0.5508892943944577
AcquisitionMatrixPE192
AcquisitionNumber1
AcquisitionTime14:38:21.245000
BaseResolution192
BodyPartExaminedHEAD
ConsistencyInfoN4_VE11B_LATEST_20150530
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171215 Clang7.3.0
DeviceSerialNumber66072
DwellTime4.4e-06
EchoTime0.00204
FlipAngle8
ImageOrientationPatientDICOM[0, 1, -0.000174522, 0, -0.000174522, -1]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressBoulevard_Jean_Moulin_27_Marseille_District_FR_13005
InstitutionNameUniversite_d_aix_Marseille
InstitutionalDepartmentNameDepartment
InversionTime1
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingSteps192
PhaseResolution1
PixelBandwidth590
ProcedureStepDescriptionPNH_Elouk_anat
ProtocolNamet1_mprage_sag
PulseSequenceDetails%SiemensSeq%_tfl
ReceiveCoilActiveElementsL11
ReceiveCoilNameLoop_11
ReconMatrixPE192
RepetitionTime2.9
SAR0.134212
ScanOptionsIR
ScanningSequenceGR_IR
SequenceName_tfl3d1_16ns
SequenceVariantSK_SP_MP
SeriesDescriptiont1_mprage_sag
SeriesNumber6
ShimSetting[-637, -11039, -1083, -882, 134, -634, -1153, 255]
SliceThickness0.8
SoftwareVersionssyngo_MR_E11
StationNameAWP66072
TxRefAmp239.965
md5sum4007c335929205e66ad19daddcf0dbf6
softwaremriqc
version0+untagged.2630.gf70c410.dirty
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.